Intro Immunology

[maleeha]

Any sisters out there who have done introductory immunology IMMU2101?
Please message me if I can borrow your notes and/or textbook.

JazakAllah khair

[Imran]

I'm not exactly a sister lol but I'd advise u to look at the past Immu papers and u can actually prepare ur answers to all the questions as they have a pool of 24 or so questions which they repeat each year-U can get ABBAS and Lichtman from the library(medical especially). If u can't get ABBAS u can always get Roitt and Brostof which is quite good. I'm doing third yeAR immu at present and not sure if the questions are the same as second year(similar though)-I could send notes if u wanted but not sure if the notes would be what u want(note: notes here mean prepared answers to the questions). If anyone else wants notes for immu or anything feel free to mail me etc. May allah help and reward us all.

[Imran]

I'm an idiot-just relaised it's already second semester and my post was pretty useless for u-but if anyone else is planning to do immu-u can contact me if u need something, past papers should be done etc etc lol Better still if someone more computer literate like khanji could create a section where everyone just puts up their notes-i'm sure most of us type it-that way it'll be easier for people to access-kind of like a virtual library or e-resources sumsa style

[Miriam]

thats okay bro, you've got some great tips there :D

[Imran]

Lol tips look better when written but may not be so when followed. Hope everyone does well-we leave it too late most of the time

[maleeha]

JazakAllah khair for the tips!
Hope that we have a e-resource section soon inshALLAH..

[Imran]

here are some of the notes my friends and me prepared fro immu-ahmed is it possible to make it available to members only? If people want it they can join and contribute as well so it helps everyone

they r a bit muddled some questions have been answered later although not earlier-i'm a bit disorganised so will have to search for more

[Imran]

the previous attachment has a lot of incomplete answers-have to find the file with the complete stuff

[Imran]

I'm not going to put up the other notes-random people will be able to access them rather than just the members-if u need stuff u can message me etc

[hafizyakob]

Salam.

Im done with 2nd year immunology and will be proceeding into 3rd year next sem. Does anyone have lecture notes or answers for past exam papers to spare me with? Thank you :)

[Imran]

Salam.

Im done with 2nd year immunology and will be proceeding into 3rd year next sem. Does anyone have lecture notes or answers for past exam papers to spare me with? Thank you :)

wa-alaikum assalam
Lecture notes I may have lying around or on my computer but they are pretty big with the diagrams and so can't be uploaded here-are u a brother? Then if u want u can meet me in the musallah and I'll see if i can transfer any of my notes on usb(prepared answers to the q) or i can upload some notes for a short period on the forum

But for past papers and that we used a set of resources to also copy paste sometimes to make the answers-here's a summary on some of the T cell functions and the transcription factors involved

Helper T Cells

Helper T cells are
T lymphocytes that belong to the
CD4+ subset.
These cells have a number of direct functions, but they get their name from the help they provide to other types of effector cells, such as B cells and cytotoxic T lymphocytes (CTLs). The help consists of secreted cytokines that stimulate the helped cells.

Types of Helper T Cells

Four kinds have been identified:
Th1
These participate in cell-mediated immunity. They are essential for controlling such intracellular pathogens as viruses and certain bacteria, e.g., Listeria and Mycobacterium tuberculosis (the bacillus that causes tb). They provide cytokine-mediated "help" to cytotoxic T lymphocytes — perhaps the body's most potent weapon against intracellular pathogens.
Th2
These provide help for B cells and are essential for the production of IgE antibodies and perhaps assist in the production of other classes as well. Antibodies are needed to control extracellular pathogens (which — unlike intracellular parasites — are exposed to antibodies in blood and other body fluids).
Tfh
These also provide help to B cells enabling them to develop into antibody-secreting plasma cells. This occurs in nests of lymphoid cells — called follicles — in the lymph nodes. The most abundant helper T cells there are B-cell helpers called follicular helper T (Tfh) cells.
Th17
These protect surfaces (e.g., skin, lining of the intestine) against extracellular bacteria.
In addition, there is another related subset that dampens rather than promotes immune responses. These cells, designated Treg, are discussed on another page. Link to it.
Origin of Helper T Cells

Like all T cells, Th cells arise in the thymus.
Link to drawing showing the anatomy of the lymphatic system, including the location of the thymus. (52K).
When they acquire CD4, they are called pre-Th cells.
When they are presented with both
an antigen and
appropriate cytokines,
they begin to proliferate and become activated.
It is the nature of the stimulation — the type of antigen-presenting cell and cytokine(s) — that determines which path they enter.
Discussion of how antigens are presented to T cells
Th1 Cells

Th1 cells are produced when dendritic cells and pre-Th cells form an immunological synapse in which the dendritic cell
presents antigen to the T cell's receptor for antigen (TCR), and
secretes interleukin 12 (IL-12) as well as interleukin 18 (IL-18) and IFN-γ (not shown).
More on dendritic cells.
The paracrine stimulation by these cytokines causes the Th1 cells to secrete their own lymphokines:

tumor-necrosis factor-beta (TNF-β) (also known as lymphotoxin) and
interferon-gamma (IFN-γ)
These
stimulate macrophages to kill the bacteria they have engulfed;
recruit other leukocytes to the site producing inflammation.
Th2 Cells

Th2 cells are produced when basophils present antigen to the T cell's receptor for antigen (TCR) along with

the costimulatory molecule B7 (CD80 & 86)
the paracrine stimulant interleukin 4 (IL-4).
The major lymphokines secreted by Th2 cells are
interleukin 4 (IL-4). This
stimulates class-switching in B cells and promotes their synthesis of IgE antibodies.
acts as a positive-feedback device promoting more pre-Th cells to enter the Th2 pathway.
blocks the IFN-γ receptors from entering the immunological synapse on pre-Th cells thus inhibiting them from entering the Th1 path (shown in red).
Interleukin 13 (IL-13). This also promotes the synthesis of IgE antibodies as well as recruiting and activating basophils.
Interleukin 5 (IL-5). Attracts and activates eosinophils.
Link to graphic showing how Th2 cells stimulate B cells to mature into antibody-secreting plasma cells.

Two transcription factors have been found that play a critical role in the choice between becoming a Th1 or a Th2 cell.
T-bet for Th1 cells
GATA-3 for Th2 cells
T-bet produces Th1 cells by
turning on the genes needed for Th1 function (e.g., for IFN-γ)
blocking the activity of GATA-3.
Mice whose genes for T-bet have been "knocked-out" lack Th1 cells and have elevated numbers of Th2 cells (making them susceptible to such Th2-mediated disorders as asthma).

Reciprocal inhibition of Th1 and Th2 cells.

The antigenic stimulus that sends pre-Th cells down one path or the other also sets the stage for reinforcing the response.

A Th1 response inhibits the Th2 path in two ways:
IFN-γ (shown above in red) and IL-12 inhibit the formation of Th2 cells;
IFN-γ also inhibits class-switching in B cells.
A Th2 response inhibits the Th1 path:
IL-4 suppresses Th1 formation (shown above in red).
Negative feedback of Th1 and Th2 cell formation

There is also evidence that late in the immune response, negative feedback mechanisms come into play to dampen the response.
IL-4 kills (by apoptosis) the precursors of the dendritic cells that induce the Th2 path and thus further production of IL-4.
IFN-γ may eventually turn off the Th1 response that produced it.
Th1 and Th2 cells have different chemokine receptors.

Chemokines are cytokines that are chemotactic for (attract) leukocytes. The members of one group, who share a pair of adjacent cysteine (C) residues near their N-terminal, are designated CC chemokines.

Chemokines bind to receptors on the responding leukocyte. The receptors are transmembrane proteins with the chemokine binding site exposed at the surface of the plasma membrane. CC chemokine receptors are designated CCR.

With their different functions, we might expect that Th1 cells and Th2 cells would respond differently to chemokines. And so they do.

Th1 cells express the chemokine receptor CCR5 (but not CCR3).
Th2 cells express the chemokine receptor CCR3 (but not CCR5).
CCR3

One chemokine that binds to CCR3 is called eotaxin. It is secreted by epithelial cells and phagocytic cells in regions where allergic reactions are occurring.

CCR3 is found on
Th2 cells
eosinophils
basophils
all cells implicated in allergic responses (e.g., asthma).
CCR5

CCR5 is found on
Th1 cells, especially those in the lymphoid tissue of the intestine
macrophages
CCR5 also acts — along with the CD4 molecule — as a coreceptor for HIV-1, the retrovirus that causes AIDS. This fact may explain
why destruction of the lymphoid tissue of the intestine occurs soon after HIV infection;
why certain HIV-infected men
with inherited mutations preventing the expression of CCR5 or
who produce high levels of the natural ligand for CCR5 (a chemokine designated CCL3L1). CCL3L1 presumably competes with HIV for access to CCR5.
can tolerate their infection for long periods without progressing to a full-blown case of AIDS;
the collapse of cell-mediated immunity in the late stages of AIDS.
One striking illustration: an AIDS patient with leukemia was given a bone marrow transplant from a donor whose cells did not express CCR5. Two years later, the patient was not only cured of his leukemia but of AIDS as well.
Tfh Cells

Tfh cells are a recently-identified subset of CD4+ helper T cells. They are found in nests of B cells — called follicles — in the lymph nodes.

They probably start out like other "naive" Th cells, but when exposed to
cells presenting antigen to them, e.g., dendritic cells and
the cytokines IL-6 and IL-21
they enter a pathway that appears to be distinct from that of Th1 and Th2 cells. The combined stimuli of
antigen binding to the TCR and
exposure to IL-6 and IL-21
activate a transcription factor called Bcl6 (first identified in a B-cell lymphoma). Bcl6 turns on a collection of genes which, among other things, cause the Tfh cells to collect in the follicles where they stimulate B cells to
undergo class switching with the synthesis of all the antibody classes (except IgE);
undergo affinity maturation;
form memory B cells.
Th17 Cells

Th17 cells are another recently-identified subset of CD4+ T helper cells. They are found at the interfaces between the external environment and the internal environment, e.g., skin and lining of the GI tract.

They probably start out like other "naive" Th cells, but when exposed to
cells presenting antigen to them, e.g., dendritic cells
several cytokines notably
transforming growth factor-beta TGF-β, and
IL-6
they enter a pathway distinct from that of Th1, Th2, and Tfh cells. The combined stimuli of
antigen binding to the TCR and
exposure to the cytokines
activate a nuclear retinoid receptor designated RORγt. This is a transcription factor that turns on a collection of genes which, among other things, leads to
the synthesis and secretion of IL-17 (giving the cells their name);
increased synthesis of the plasma membrane receptor for the interleukin IL-23. Interaction of IL-23 (perhaps secreted from nearby dendritic cells) with the receptor drives the rapid proliferation of the Th17 cells.
Situated in the skin and the lining of the GI tract, Th17 cells are positioned to attack fungi and bacteria at those locations. They do this by secreting defensins and recruiting scavenging cells, especially neutrophils, to the site. The result: clearing away of the invaders with accompanying inflammation.

But inflammation is a double-edged sword. So it is not surprising that Th17 cells have been implicated as potent effectors of such autoimmune disorders as
Crohn's disease (an inflammation of the small intestine);
ulcerative colitis (inflammation of the large intestine);
psoriasis (inflammation of the skin);
an animal model (in mice) of multiple sclerosis.
Summary Table

Type Cytokine Stimulus Master
Transcription Factor Effector Cytokine(s) Main Target Cells Effector Functions Pathological Effects
Th1 IL-12 T-bet IFN-γ Macrophages, dendritic cells Intracellular pathogens Autoimmunity;
cell-mediated allergies
Th2 IL-4 GATA-3 IL-4, IL-5 & IL-13 Eosinophils, basophils, B cells Extracellular pathogens Asthma and IgE-mediated allergies
Tfh IL-6 & IL-21 Bcl6 IL-21 B cells Class Switch Recombination and Affinity Maturation of antibodies Autoimmune diseases?
Th17 TGF-β plus IL-6
Inhibited by retinoic acid RORγt IL-17 & IL-22 Neutrophils Extracellular bacteria;
mediates inflammation Autoimmune diseases
Treg TGF-β minus IL-6
Stimulated by retinoic acid and IL-2 Foxp3 IL-10 all the other types of T cells Immunosuppression; anti-inflammatory None?

[Imran]

Also try this link-it has all the stuff required for immu pretty much(exceptions exist) to alot of the stuff

http://www.raymondcheong.com/Year1/immuno.html

[hafizyakob]

I might not be able to meet up because Im leaving for home right after exams and I need the notes for my winter break. WOuld you mind to post it here or email it to me? my email is hafizyakob@gmail.com


Thanks

[Imran]

I might not be able to meet up because Im leaving for home right after exams and I need the notes for my winter break. WOuld you mind to post it here or email it to me? my email is hafizyakob@gmail.com


Thanks

Here are some of the ones for immu 3102-I'll leave the notes here for only a little bit because some of the stuff were also made by friends and as the forum is accessible to everyone(not just SUMSA) i'll take it off soon i think(inshallah)

There's something wrong they don't allow me to upload files here for some reason-or i'm incompetent-

[walla]

Br. Imran, I just logged out and tried to download the notes you uploaded, it didn't work. So only members can access those notes :)

[Imran]

Br. Imran, I just logged out and tried to download the notes you uploaded, it didn't work. So only members can access those notes :)

Thanx for that=I did try to upload them but I couldn't-it allows me to attach videos and links but not files saved on computer-is there a way to upload it in this current format? because I can't and I'm not good with technology

[Imran]

Thanx for that=I did try to upload them but I couldn't-it allows me to attach videos and links but not files saved on computer-is there a way to upload it in this current format? because I can't and I'm not good with technology

Thanx for the advice to sr walla in the other thread-i've been doing quick replies which is why i haven't been able to attach

[hafizyakob]

Salam.

Is the IMMU3202 poster presentation an individual work? Can we choose any topics or would we be given a list of diseases to work on?

[Imran]

Salam.

Is the IMMU3202 poster presentation an individual work? Can we choose any topics or would we be given a list of diseases to work on?

we had to draw a topic out of a hat-it's done in pairs but you are marked individually on the oral presentation-the poster itself is marked as a group also you should look at more reputable sources for the poster eg BMJ etc, depending on the tutor marking they check references